FastQCFastQC Report
Wed 8 May 2024
EGAF00005068506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9176535
Total Bases926.8 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN200000.21794718812710895No Hit
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA155150.1690725311896048No Hit
GGTGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTGA95190.10373196418909751No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)