FastQCFastQC Report
Thu 2 May 2024
EGAF00005068523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57550241
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT890440.15472393938367696No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG788390.13699160703775334No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT620620.10783968741329858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)