FastQCFastQC Report
Sun 5 May 2024
EGAF00005068528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41334815
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG693920.1678778530882502No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG616610.14917449128537288No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT491850.1189917022732532No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC432640.10466721575988668No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA428920.103767248020827No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN421310.10192618498473986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)