FastQCFastQC Report
Wed 8 May 2024
EGAF00005068535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6302945
Total Bases636.5 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT164810.26148094263871885No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG126260.2003190572026251No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC85920.13631722948558175No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)