FastQCFastQC Report
Fri 10 May 2024
EGAF00005068552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10589321
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length105
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG204570.19318519100516454No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT122150.1153520608167417No Hit
GTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGAC116210.10974263600092961No Hit
GGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACG105900.10000641212028609No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)