FastQCFastQC Report
Thu 12 May 2022
EGAF00005068582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44479693
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT903970.20323206817097408No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN657720.14786972562962608No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC572560.12872391003238265No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG550170.12369015226791247No Hit
CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGT512030.115115452797752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)