FastQCFastQC Report
Wed 8 May 2024
EGAF00005068585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6832034
Total Bases690 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT144230.2111084341793381No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA85740.12549703353349823No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC68770.10065816417189961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)