FastQCFastQC Report
Sat 11 May 2024
EGAF00005068725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15621331
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC404710.2590752350103842No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG402920.25792936594199306No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA281470.1801831098771289No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAATGGAAATCTCGTAT229910.14717695950492313TruSeq Adapter, Index 2 (97% over 38bp)
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA205760.13171732933640545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)