FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005068846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005068846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14485315
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCTAGG8550.09.43059865-69
CCTAGGG9150.08.49747765-69
CACCTAG11150.06.714996365-69
CTAGGGG11750.06.372006470-74
CTAGGAG14150.05.799919110-114
GGCTAGG14650.05.3071294110-114
GCTAGGA15200.05.304543110-114
GGCCTAA17900.05.2283983140-144
Produced by FastQC (version 0.11.5)