FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005069397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005069397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9060642
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGACC13700.019.2669071
TTTCGCG1305.6330464E-717.3541491
GCGACCT18800.016.7552342
CGACCCG21800.016.30671523
CGTGGCG22950.015.58703618
TTAGTCA23500.015.2234145
GGCGACC23600.015.15806821
TCAGACG25000.015.11875313
GCGACCC24300.014.72141522
GTGGCGA24600.014.6330219
GCGCGTT1553.5244193E-614.5550931
ACGCGCG950.005379977614.2104532
TGGCGAC25450.014.14429520
CCGCTGA25200.014.01724427
CAGACGT27650.013.91386114
ACCCGCT26050.013.90534225
TCCGATC2451.1004886E-913.77467933
TCGCGAC2501.4279067E-913.5362371
ATTAGTC28200.013.40366844
CGCTGAA26750.013.28906428
Produced by FastQC (version 0.11.5)