FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005069488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005069488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12161375
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC4800.011.26453945
CTCGTAT4955.456968E-1210.01259443
TCTCGTA5201.6370905E-119.53133842
TCGTATG6652.9831426E-107.791754744
TATCTCG7051.02591E-97.34982140
ATCTCGT8203.425157E-96.593795341
ACACGTC9401.0404619E-85.98019812
CGTCTGA10801.0477379E-95.82975315
CAAGTCG4950.0096244295.461415343
Produced by FastQC (version 0.11.5)