EGAF00005069494 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005069494
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14985658
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCAAT	500	0.0	14.863597	32
TATGCCG	455	0.0	14.854259	45
CTCGTAT	665	0.0	11.1795225	41
ACGCCAA	680	0.0	10.5944605	31
CGTATGC	725	0.0	10.564881	43
TCTCGTA	690	0.0	10.447968	40
TATCTCG	715	0.0	9.438605	38
TCGTATG	805	0.0	8.955372	42
GTCACGC	835	0.0	8.887172	28
AGTCACG	950	0.0	8.758186	27
ACACGTC	995	0.0	8.36153	12
ATCGGAA	925	0.0	7.7922125	1
ATCTCGT	990	0.0	7.728072	39
CGTCTGA	990	0.0	7.4955206	15
TCGGAAG	1160	0.0	7.184207	2
ACGTCTG	1405	0.0	6.2418213	14
CGGAAGA	1375	0.0	5.8923454	3
CACGTCT	1655	0.0	5.2989483	13