FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005069514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005069514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16235027
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4051.7228649E-68.344501545
TCCGATC4507.933331E-67.49517876
CGTATGC5703.0378793E-56.324234543
CCGATGT5409.886476E-56.25542332
ACCGATG5153.6423048E-46.119923631
CTCGTAT5601.622829E-46.033540741
CCGATCT6352.3247816E-56.01975067
TTCCGAT6402.6219446E-55.9727215
CACCGAT6503.268748E-55.887305730
GGGTTCG5800.0016248895.4425111
TATCTCG7051.13373295E-45.424049438
GGAGCGT6803.8210096E-45.3053051
CGATGTA5650.00717026465.18156333
Produced by FastQC (version 0.11.5)