FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005069531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005069531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24097557
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTACG2450.017.46367632
CGTACGT3050.014.76655633
ACCGTAC6359.749783E-107.7995431
CTCGTAT7352.4556357E-97.049793243
TCTCGTA7953.5391095E-65.667606442
TCGTATG9051.0617714E-65.476587344
CGTATGC8601.4029405E-55.239251645
GCGATTG8203.498603E-55.2250911
CGAAGAT19350.05.1277381
GCGTATA5750.0086616395.09834961
GTACGTA8952.8202448E-55.032178434
Produced by FastQC (version 0.11.5)