FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005069550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005069550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11996151
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTCG5100.012.3721133
CTCGTAT5250.011.59505244
GATCGGA6350.010.2801131
CGTATGC5500.010.24789645
TCTCGTA5750.09.80266343
TTCGGAA7300.09.56962136
CGTCTGA8200.09.04851716
TCGGAAT7050.08.93428737
TCGTATG7100.08.57359145
GTTTCGG7750.08.14164734
AGTCACG8350.07.808882728
ATCTCGT7751.6370905E-117.563861442
TTTCGGA8750.07.468714735
GTCACGT8750.07.451873329
ACACGTC8800.07.409409513
TCGGAAG9557.2759576E-126.82817363
ACGTCTG10900.06.807112715
TCACGTT10103.6379788E-126.690632330
ATCGGAA10052.7284841E-116.48865272
CGGAAGA11751.8189894E-126.31452564
Produced by FastQC (version 0.11.5)