FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005071958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005071958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5567044
Sequences flagged as poor quality0
Sequence length75
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA1350.003244074515.33408568
TCGCCGT1750.001135306913.80080167
TCGTGTT12100.010.8349569
TAGATCG3258.991785E-510.6156269
TACTCGG12400.010.57262538
TAGCCGG15000.010.3506942
GCGTCGG7555.456968E-1210.05320369
CTACTCG13100.010.00767537
TTAGCCG14950.09.9242761
GTAGTCC31350.09.68390327
TGTAGTC39600.09.23480526
ACTCGGG14600.08.97940839
CTTCGTA6554.368121E-88.9539949
TAGTCCC34700.08.84842228
GGTCGCC5101.1294418E-58.79431269
TCTCGGT8709.822543E-118.724565566
TGGTCGC5151.2770281E-58.70916668
GAAAGAA211750.08.6362281
TATCGGT3200.009985478.62550167
GTAGGCG12450.08.59055269
Produced by FastQC (version 0.11.5)