FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005072099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005072099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32846651
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTTA41600.033.481331
CGGTTAT41350.033.0150951
GGGTTAT140950.032.4894031
GGGTTAC119450.031.1037881
CGGTATA29850.030.7984071
CGGATTA32300.030.602331
GGGTATT150150.030.1994781
GCGTATA21650.029.8520871
GGGGTAT103950.029.7902741
GGGTTTA157800.029.742931
GCGTTAA22700.029.6892851
GGGTATA101400.029.4487421
GGGTTAA123700.028.94551
GCGTATT35700.028.849551
GGGATAC112450.028.7678471
GGGGGGG161100.028.5544321
CGGTTAA36150.028.3948211
GGCTATT160350.028.3000181
CGGTATT48500.028.1479231
GCGTTTA39650.027.8931641
Produced by FastQC (version 0.11.5)