FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005072172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005072172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11393163
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA46200.082.285539
TCTTCCG53000.072.5435648
CGTGTGC58750.067.2372061
GTGTGCT118700.033.8574452
GTGCTCT116700.033.686454
CGACGCT2950.031.765691
TGTGCTC126850.031.0477623
GCTCTTC127850.030.354396
TCCGATC37550.021.7437810-14
TGCTCTT186900.021.2648945
CCGATCT40250.021.14382410-14
CGTTGGA60400.018.8563271
CTCTTCC213950.018.5763447
TTCCGAT41900.018.31787510-14
AAACGGG70600.014.8895527
ACGGGAT44150.014.6772049
GAAACGG73900.014.6143766
AACGGGA60550.014.269238
GGAAACG74150.013.98255
CGATCTA12250.011.99018910-14
Produced by FastQC (version 0.11.5)