FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005072263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005072263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11674465
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGCT73800.0137.066421
GACGCTC85000.0118.490782
TTCCGAT87250.0114.852539
ACGCTCT91350.0110.287663
CTTCCGA94050.0106.395388
TCTTCCG98550.0101.610637
CGCTCTT98500.0101.517344
GCTCTTC178650.056.8588685
CTCTTCC296000.034.535466
TCCGATC84050.024.34188710-14
CCGATCT88650.024.18320510-14
CGATCTA18900.018.28299310-14
CGTTGGA61450.016.8381521
CGATCTG30850.014.37452310-14
AAACGGG72750.014.2494517
CGACGTC3609.815388E-414.06940651
AACGGGA60200.013.752078
CGATCTT47700.013.70362210-14
ACGGGAT44500.013.4271819
GAAACGG77550.012.6248356
Produced by FastQC (version 0.11.5)