FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005072276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005072276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4860241
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAACG3100.006125787713.9346855
CGTTGGA26650.013.79513551
AAACGGG32350.013.5757287
TTCCGAT7005.1220923E-813.3706639
ACGGGAT18800.013.020539
GAAACGG33750.012.3726236
AACGGGT8806.159098E-912.2720238
AACGGGA26600.011.9090918
GGAAACG34050.010.9949645
CCGGATC4600.006406896310.9558932
GCGTCGG7200.010.200779140-144
CGATCGG2201.641929E-79.818932140-144
ACGGGTT7352.0267726E-49.7953579
CCCGGAT6000.00410351449.6115121
CTTCCGA8356.9661604E-59.4844868
TCTTCCG10458.964713E-68.9564247
ACGATCG1600.00473321658.100618140-144
CCGATCT5653.9953065E-67.64557939
GTTGGAA68000.07.51721572
CCGAATG15502.7811056E-67.43183232
Produced by FastQC (version 0.11.5)