FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005072299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005072299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16043341
Sequences flagged as poor quality0
Sequence length150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGCT11400.0110.44491
GACGCTC22900.055.055162
TTCCGAT28650.045.4839639
ACGCTCT30700.041.049413
CTTCCGA32050.039.984938
TCTTCCG38350.033.979557
CGCTCTT40200.031.7069474
CGTTGGA76100.015.0235881
TCCGATC19900.014.10963910-14
ACGGGAT53000.012.7689849
AAACGGG87750.012.6350787
GAAACGG90700.012.3064186
AACGGGA72350.012.1401958
CCGATCT24100.012.06892910-14
GGAAACG96950.011.0674035
GCTCTTC141050.010.2109035
AACGGGT23100.09.0383768
AGAGCAC3145500.07.84635140-144
GAGCACA2977650.07.79926140-144
AGCACAC2790550.07.6348596140-144
Produced by FastQC (version 0.11.5)