FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005072433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005072433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10480197
Sequences flagged as poor quality0
Sequence length50
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCGTA1100.036.0058251
CGGACCG1950.034.9800151
GCGCGTT2450.034.1279681
GCGCGGA1050.033.5292361
GCGTCCA12050.032.6857871
CGGCGAT2400.032.0885241
GCGTCGG1100.032.0051771
GCGACCA10750.031.9307461
CGGTATG10550.031.9103761
CGGTACT9900.031.7829171
CGGTCTG14100.031.6788851
GCGCCTT18100.031.6073231
CGGTATA13150.031.2902321
CGGTCAT10500.031.22411
CGGTCCT14150.030.9449371
CGGTACA12750.030.8912721
CGGTATT18700.030.8285181
CGGTCGA1500.030.8049811
GCGCATT11450.030.7473341
CGGCGAG2150.030.7026421
Produced by FastQC (version 0.11.5)