FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005073430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005073430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5916871
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG101130.17091804097131744No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGTG17350.00187894416.982243145
GTTTAGT23455.207952E-65.8538941
AGGGGGG177400.05.62030121
GTTTAAT46651.2732926E-115.42063951
GGGTTAG24253.2508548E-45.0549324
Produced by FastQC (version 0.11.5)