FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005073499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005073499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3991544
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATCGG10357.473998E-49.922917145
GCCAATT21201.4639045E-76.76843361
TAGAGGG21650.00187853066.3250012145
GACCAAC23000.00369934745.953751145
GGAAAAT63800.05.84758761
GTGAATT35109.777068E-95.5188771
GGCAAAC30856.8802547E-75.34892751
GTTGAAC24507.2474286E-55.27109051
GGAGTTA17950.00696662445.19409235
GTCTACT18000.0071653165.1816121
GCAAAAT49852.0008883E-115.18121241
GAAACAT46754.7475623E-105.0643811
ATTAGGA21450.00194101375.0171611
GTTTAAA41601.8166247E-85.0014821
Produced by FastQC (version 0.11.5)