FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005082054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005082054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22879310
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG686550.015.752274145
ATGCCGT636550.015.361233145
CGTATGC861050.014.933852145
CCGTCTT490400.014.928546145
GCCGTCT537600.014.723464145
GTATGCC822600.014.697856145
TCGTATG958450.014.656523145
TGCCGTC600050.014.036711145
CTCGTAT1040900.013.913394145
TCTCGTA1128400.013.778782145
ATCTCGT1255200.013.634201145
CGTCTTC476100.013.184581145
AATCTCG1375800.013.113427145
TCAATCT1764250.011.976366145
CAATCTC1649750.011.731127145
TTCAATC1878550.011.259241145
AGTTCAA2448650.010.553085145
GTTCAAT2048450.010.484626145
CAGTTCA2627650.09.897637145
CCAGTTC2845650.09.590254145
Produced by FastQC (version 0.11.5)