FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005082082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005082082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20681401
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAAA91100.021.246092145
ATGCCGT591550.016.114634145
TATGCCG640700.016.021187145
GCCGTCT491000.015.206943145
CTCGTAT982750.014.974045145
TCGTATG900400.014.926582145
CGTATGC805700.014.8995495145
TGCCGTC553950.014.591181145
GTATGCC766200.014.55125145
CCGTCTT446550.014.399243145
CGTCTTC435400.013.852273145
TCTCGTA1045350.013.820753145
ATCTCGT1160000.013.792103145
AATCTCG1270200.012.7496195145
CGAATCT1514700.012.548511145
TCGAATC1646850.012.15342145
GAATCTC1496900.011.981145
GCTCGAA2120500.011.493321145
CTCGAAT1827100.010.902863145
CGCTCGA2281250.010.902698145
Produced by FastQC (version 0.11.5)