FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005082104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005082104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18009372
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC453100.015.75787145
TATGCCG358750.015.396372145
TCGTATG504000.015.0149975145
ATGCCGT340350.014.908282145
CTCGTAT553850.014.618956145
GTATGCC443900.014.435188145
ATCTCGT668800.013.992179145
GCCGTCT295200.013.922654145
TGCCGTC332400.013.912814145
TCTCGTA596850.013.359274145
AATCTCG737200.013.205233145
CCGTCTT271350.013.196308145
CGTCTTC278400.011.87274145
CTAAATC1010000.011.5332145
GCCTAAA1263950.011.263332145
TAAATCT1004300.011.100645145
AAATCTC946700.011.048652145
TGCCTAA1375100.010.727178145
ATGCCTA1499450.010.640043145
CCTAAAT1130050.010.436269145
Produced by FastQC (version 0.11.5)