FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005082202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005082202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18499308
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT502250.015.86235145
TATGCCG542350.015.210813145
CCGTCTT387600.014.737787145
CGTATGC670700.014.440025145
TCGTATG745250.014.367074145
GTATGCC645550.014.182842145
TGCCGTC468250.014.181021145
CTCGTAT801700.013.527251145
TCTCGTA857050.013.507922145
GCCGTCT420200.013.490888145
CGTCTTC375950.013.189119145
ATCTCGT951100.013.002972145
AATCTCG1043150.012.946605145
ATCGTAT38650.011.441163145
GAATCTC1223100.011.27297145
TGAATCT1367100.011.098359145
ATGAATC1423200.010.798408145
TATCGTA32100.010.162423145
CAATGAA1881050.010.035301145
TCAATGA1987300.09.943796145
Produced by FastQC (version 0.11.5)