FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005082348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005082348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14850354
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCATG38700.013.5812488
GTGAGTA40200.010.0341682
AGTGAGT41050.09.5677321
TGAGTAG42500.09.4906013
GAGTAGG53400.08.2238844
CCCTTTA84450.06.9937283
TAGGAGG55650.06.85706957
CCTTTAG95250.06.4245444
CTAGATC12400.06.0383353140-144
TTAGCAT121400.05.1597477