FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005082532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005082532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15791194
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCACA131950.08.347529
AGAGCAC150800.07.06562958
GATCGGA192350.06.4296071
AGGGGGG38800.06.3749221
CGAGTTA37000.06.10911930-34
GAGTTAG38400.06.036362630-34
ATCGGAA232450.05.8880362
TCGGAAG201950.05.7428623
GTTAGCA42250.05.588780435-39
AGTTAGC39700.05.403754735-39
GGGGGGG69900.05.2558062
AAGAGCA234200.05.0719857
Produced by FastQC (version 0.11.5)