EGAF00005084332 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005084332
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17452653
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	18230	0.0	12.637713	9
AGAGCAC	18920	0.0	12.062668	8
CCACTCA	6255	0.0	9.898659	9
GATCGGA	25315	0.0	9.541538	1
AAGAGCA	29880	0.0	7.9991765	7
GCCACTC	7720	0.0	7.833705	8
TCGGAAG	30895	0.0	7.7161713	3
GAAGAGC	31135	0.0	7.6303887	6
ACGTTAA	4750	0.0	7.1232734	4
ATCGGAA	36390	0.0	6.9713635	2
GGAAGAG	36430	0.0	6.7188525	5
CGGAAGA	41235	0.0	6.180344	4
AGCCACT	10090	0.0	6.1361375	7
TACGTTA	6810	0.0	6.1339874	3
AACACTA	6530	0.0	5.4022007	7
CAGTCAC	9475	0.0	5.258356	25-29
AAGCCAC	12200	0.0	5.2518435	6
CGTTAAA	7740	0.0	5.115606	5