FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005085390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005085390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16372250
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGGGA93850.08.310991
ACTAGGG7850.00400066848.2532077
CTTGGGG89850.06.3059981
CTTGGCA152550.06.27064661
CTTGCGA79250.06.22094961
GATCGGA188800.06.04102851
CTTGGTA79750.05.90514371
CTTAACT40502.5465852E-115.8140151
CTTAGTA38351.3060344E-95.5643421
TCGGAAG202500.05.510083
CTTGGCT94850.05.5081051
CTTGGGC111400.05.3503351
CTTGGTG144850.05.2323881
CTTGTGA74850.05.210331
CTTGTCA124100.05.15856171
CTTCGGA199700.05.12174461
Produced by FastQC (version 0.11.5)