EGAF00005085671 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005085671
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13850675
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACTAGG	10460	0.0	6.6769094	140-144
TCACTAG	11260	0.0	6.3304152	140-144
ACTAGGA	10035	0.0	6.3139443	140-144
CTAGGAT	10015	0.0	6.154011	140-144
ACACGTC	26605	0.0	5.9808707	140-144
CACACGT	27675	0.0	5.9733734	140-144
CACGTCT	26030	0.0	5.8308496	140-144
GTCACTA	13465	0.0	5.7215385	140-144
AGTCACT	14130	0.0	5.7172356	140-144
GCACACG	31495	0.0	5.4957666	140-144
CAGTCAC	15220	0.0	5.4213243	140-144
ACGTCTG	26695	0.0	5.4212766	140-144
GATCGGA	43440	0.0	5.4166107	140-144
AGCACAC	35030	0.0	5.2042594	140-144
AGATCGG	47715	0.0	5.2029266	140-144
TAGATCG	12165	0.0	5.172908	140-144
TACATGC	8500	0.0	5.107687	1
CGTCTGA	28555	0.0	5.00259	140-144