EGAF00005085672 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005085672
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13850675
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGTGT	27665	0.0	5.799984	140-144
TCGTGTA	27510	0.0	5.5446954	140-144
TAGATCT	8730	0.0	5.54367	140-144
TAGATCG	12450	0.0	5.530073	140-144
TGTAGGG	23285	0.0	5.5053644	140-144
CGTGTAG	27025	0.0	5.393704	140-144
GATCGGA	43485	0.0	5.3759027	140-144
AGCGTCG	33145	0.0	5.3494897	140-144
GTGTAGG	26215	0.0	5.3241005	140-144
GTAGGGA	22760	0.0	5.2842884	140-144
CTAGATC	3660	0.0	5.2341104	140-144
GCGTCGT	32240	0.0	5.2092576	140-144
AGATCGG	48090	0.0	5.1306796	140-144
CGTCGTG	32525	0.0	5.1193266	140-144
CAGTGTA	11745	0.0	5.0771456	140-144
GTAGATC	12210	0.0	5.060739	140-144