EGAF00005085953 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005085953
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17210055
Sequences flagged as poor quality	0
Sequence length	150
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCTAGT	1375	0.0	11.723482	120-124
GCTAGTC	1305	0.0	11.690597	120-124
GAGCTAG	1430	0.0	10.778747	95-99
AGGCTAG	1475	0.0	10.538361	120-124
GGAAGCT	19205	0.0	10.304621	4
TCGGGAA	20100	0.0	9.850762	1
GGGAAGC	20910	0.0	9.847993	3
CGGGAAG	25390	0.0	7.7133303	2
CTAGTCC	1245	0.0	7.629848	120-124
CGTAACT	5235	0.0	7.4232564	9
GATCTTA	6115	0.0	7.3000937	1
AGCTGAA	26435	0.0	7.214172	7
AGCTAGA	2210	0.0	7.1718745	95-99
AAGCTGA	29365	0.0	6.9843893	6
GCTAGAA	2360	0.0	6.839265	95-99
ATCTTAC	6950	0.0	6.733863	2
GCTGAAG	32815	0.0	5.811569	8
GAAGCTG	39800	0.0	5.7679462	5
GTCTTAC	5815	0.0	5.447988	1