EGAF00005086233 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005086233
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14768575
Sequences flagged as poor quality	0
Sequence length	150
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCTAGT	1200	0.0	10.794449	120-124
GCTAGTC	1185	0.0	10.688173	120-124
GAGCTAG	1200	0.0	10.5426855	95-99
AGGCTAG	1205	0.0	10.5107765	120-124
GGAAGCT	14555	0.0	10.481891	4
GGGAAGC	16920	0.0	9.235005	3
AAGCTGA	19815	0.0	8.062595	6
AGCTAGA	1560	0.0	8.016542	95-99
AGCTGAA	19220	0.0	7.825548	7
TCGGGAA	21130	0.0	7.633494	1
GCTGAAG	20100	0.0	7.482937	8
CTAGTCC	1225	0.0	7.401908	120-124
CGGGAAG	22590	0.0	6.9489317	2
GCTAGAA	1960	0.0	6.677281	95-99
GAAGCTG	27865	0.0	5.9658027	5
GTCTTAC	5120	0.0	5.6255484	1
CTGAAGC	13690	0.0	5.6246986	9