EGAF00005086291 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005086291
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14467032
Sequences flagged as poor quality	0
Sequence length	150
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGAGT	3590	0.0	23.415205	1
GTGAGTA	3945	0.0	21.359335	2
TAACCCC	4815	0.0	17.194448	9
GTCTCTT	7085	0.0	13.398799	1
ATAACCC	6650	0.0	13.099551	8
TGAGTAT	10980	0.0	8.395372	3
GTATAAC	11410	0.0	8.202608	6
GAGTATA	11885	0.0	8.059207	4
TATAACC	13170	0.0	7.106435	7
CTCTTCA	14325	0.0	6.9879937	3
AGCATGA	15410	0.0	6.6339536	9
ACACTAT	6985	0.0	5.8749094	8
TCTCTTC	17570	0.0	5.8615584	2
TCTTCAG	20880	0.0	5.518605	4
CGCCTAA	3210	0.0	5.517431	45-49
AACCCTA	4580	0.0	5.218671	85-89
TCAGCAT	23345	0.0	5.1501136	7
CAGCATG	21310	0.0	5.1351466	8
TAACCCT	4740	0.0	5.1336427	85-89