EGAF00005086854 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005086854
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13525223
Sequences flagged as poor quality	0
Sequence length	150
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGAGT	3320	0.0	11.402108	1
GTGAGTA	3395	0.0	10.602929	2
TAAGGGG	3885	0.0	9.45048	9
GATCGGA	14830	0.0	9.081351	1
ATCGGAA	18605	0.0	7.7391973	2
AGAGCGT	17805	0.0	7.3185353	8
TCGGAAG	18680	0.0	7.014186	3
GTCTCTT	6175	0.0	6.837714	1
CTAGGAG	1365	0.0	6.7513547	50-54
AAGAGCG	21520	0.0	6.2893124	7
TAGATCT	4500	0.0	6.143246	40-44
ATAAGGG	7130	0.0	5.9573083	8
TGAGTAT	7035	0.0	5.935354	3
GAGCGTC	24710	0.0	5.535484	9
GAGTATA	7105	0.0	5.3702507	4
CTAACTA	1890	0.0	5.2565875	125-129
GGAAGAG	27405	0.0	5.227644	5
TCTAGGA	1925	0.0	5.1613336	50-54
GTATAAG	7845	0.0	5.1389914	6