FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005086960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005086960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65800655
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGTC299850.014.4571899
GATCGGA339400.013.049191
CGCCGTA79850.013.01961155-59
AGAGCGT340400.012.905358
ATCGGAA366200.012.2342772
TCGGAAG382650.011.70763
CGGAAGA409750.011.0747814
AAGAGCG403250.011.0557397
TCGCCGT99900.010.60976255-59
GCCGTAT113350.09.32523455-59
GTCGCCG113550.09.2832755-59
TGGTCGC131300.08.17251750-54
CGTATCA145100.07.704278560-64
GTGGTCG147950.07.448818750-54
CCGTATC133900.06.865207760-64
GGTCGCC139500.06.37147555-59
TCTCGGT194650.06.07060245-49
GAAGAGC873050.05.67102246
AGATCGG346200.05.612297145
CGGTGGT226750.05.333441750-54
Produced by FastQC (version 0.11.5)