EGAF00005087031 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087031
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	77658322
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	12035	0.0	8.697897	45-49
CTCGTAT	14445	0.0	7.216758	40-44
CGTATGC	14625	0.0	7.028676	45-49
GATCGGA	43380	0.0	6.983009	1
TCTCGTA	14365	0.0	6.9238753	40-44
ATCGGAA	46700	0.0	6.659493	2
TCGGAAG	47700	0.0	6.534776	3
ATGCCGT	16800	0.0	6.351725	45-49
CGGAAGA	49645	0.0	6.249552	4
CGACACT	18390	0.0	5.8737183	30-34
GCCGTCT	17470	0.0	5.8096795	50-54
AGATCGG	45125	0.0	5.5587335	145
ACGACAC	18395	0.0	5.5174303	30-34
ATCTCGT	19050	0.0	5.198242	40-44
GTCACGA	20485	0.0	5.180793	25-29
CGTCTTC	21990	0.0	5.0111265	50-54