EGAF00005087095 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087095
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63716244
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	45470	0.0	9.93424	1
ATCGGAA	47370	0.0	9.6748	2
TCGGAAG	48640	0.0	9.404741	3
CGGAAGA	50575	0.0	9.030412	4
TATGCCG	14930	0.0	8.954139	45-49
CTCGTAT	17110	0.0	8.18609	40-44
ATGCCGT	18585	0.0	7.692492	45-49
TCTCGTA	16855	0.0	7.6217446	40-44
CGTATGC	16965	0.0	6.692072	45-49
CGTCTTC	22535	0.0	6.241225	50-54
ATCTCGT	19995	0.0	6.1057653	40-44
GCCGTCT	19145	0.0	5.9679675	50-54
AGAGCAC	83700	0.0	5.7250443	8
CCGTCTT	23240	0.0	5.7087445	50-54
GAGCACA	88630	0.0	5.5129237	9
GAAGAGC	92590	0.0	5.269311	6
TGCCGTC	18580	0.0	5.150553	50-54
TCGTATG	18980	0.0	5.0801687	45-49
AGATCGG	45665	0.0	5.0484033	145