FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005087217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005087217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46746748
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC38000.018.8873843
GATCGGA291050.015.3185841
ATCGGAA309800.014.4279712
TCGGAAG316350.014.1625313
CCGATCT53550.014.0793314
CGGAAGA330400.013.5599034
TTCCGAT60300.013.2367512
TATGCCG99750.011.64323745-49
CGTATGC108550.010.35204145-49
CTCGTAT115650.09.99225140-44
TCTCGTA112750.09.79916540-44
CTTCCGA80700.09.3884651
ATGCCGT127000.09.08789845-49
CGACACT134400.08.78153130-34
GCCGTCT129150.08.67828450-54
ACGACAC133600.08.58450230-34
CGATCGG9803.672212E-48.137788145
AGAGCAC581850.08.0612668
ATCTCGT136850.08.03110140-44
GAGCACA620600.07.8032359
Produced by FastQC (version 0.11.5)