FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005087279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005087279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67406096
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA390100.09.20393851
ATCGGAA420450.08.7396522
TATGCCG125450.08.54198345-49
TCGGAAG437300.08.37116053
CGGAAGA455900.07.98193034
CTCGTAT145550.07.37212640-44
TCTCGTA146200.07.13107140-44
ATGCCGT163000.06.796583745-49
CGTATGC151300.06.63211645-49
TATCTCG160000.06.12632440-44
GCCGTCT176400.05.827102750-54
AGATCGG403400.05.6425147145
CGTCTTC218650.05.403972650-54
ATCTCGT187200.05.36010740-44
Produced by FastQC (version 0.11.5)