EGAF00005087443 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087443
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52273374
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	23390	0.0	14.433147	1
ATCGGAA	24825	0.0	13.615115	2
TCGGAAG	26290	0.0	12.939185	3
CGGAAGA	28550	0.0	11.986748	4
TATGCCG	9510	0.0	9.78828	45-49
CTCGTAT	10840	0.0	9.108787	40-44
TCTCGTA	10820	0.0	8.227802	40-44
ATGCCGT	12755	0.0	7.843691	45-49
CGTATGC	10875	0.0	6.9864063	45-49
AGAGCAC	58950	0.0	6.2349696	8
ATCTCGT	13830	0.0	6.174984	40-44
CGTCTTC	16910	0.0	5.8734493	50-54
TCGTATG	12305	0.0	5.8681283	45-49
GAGCACA	64745	0.0	5.844865	9
GAAGAGC	65545	0.0	5.6297355	6
GCCGTCT	13505	0.0	5.5828385	50-54
CCGTCTT	17000	0.0	5.501196	50-54
TGCCGTC	13470	0.0	5.360534	50-54
AGATCGG	23545	0.0	5.205364	145