FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005087472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005087472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65390835
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA119500.014.06143555-59
GAGCGTC405500.012.4603059
TCGCCGT136950.012.30150455-59
GCCGTAT150750.011.3773655-59
GATCGGA446050.011.3292851
AGAGCGT454600.011.1464058
GTCGCCG159850.010.4938555-59
ATCGGAA491850.010.3926572
TCGGAAG512750.010.0382433
AGCGTCG338750.09.8010589
TGGTCGC176450.09.72868350-54
CGTATCA180250.09.47527260-64
AAGAGCG546950.09.3969967
CGGAAGA546250.09.3692114
GTGGTCG188900.09.17191350-54
TCTCGGT252500.07.13714745-49
CGGTGGT272300.06.506501750-54
CTCGGTG281050.06.427607545-49
CCGTATC175850.06.08465160-64
GAAGAGC978900.05.56890256
Produced by FastQC (version 0.11.5)