FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005087478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005087478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56989872
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA148750.019.02725255-59
TCGCCGT161050.017.19593655-59
GAGCGTC506900.016.7749829
GCCGTAT177200.015.98055255-59
AGAGCGT554650.015.4745718
GTCGCCG182100.015.43110655-59
GATCGGA598200.015.08700751
TGGTCGC197600.014.86595550-54
GTGGTCG211050.014.13153250-54
ATCGGAA645750.013.9433632
AAGAGCG629400.013.8667257
TCGGAAG652100.013.6515733
CGTATCA198450.013.64824360-64
CGGAAGA669850.013.2783414
CGGTGTA230450.012.87914335-39
AGCGTCG447600.012.4220039
ACCGGTG246900.011.91534935-39
TCTCGGT261500.011.83141345-49
CACCGGT247000.011.32938235-39
CCGGTGT268050.011.24023935-39
Produced by FastQC (version 0.11.5)