EGAF00005087678 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087678
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59217503
Sequences flagged as poor quality	0
Sequence length	151
%GC	44

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	8290	0.0	6.5679064	145
CGCCGTA	13895	0.0	6.321494	55-59
GCCGTAT	16175	0.0	5.690299	55-59
AGCGTCG	61755	0.0	5.642731	145
CGTCGTG	55980	0.0	5.5115824	145
TCGTGTA	53530	0.0	5.5061626	145
TCGCCGT	16720	0.0	5.41813	55-59
GATCGGA	89335	0.0	5.355303	145
GTCGTGT	55805	0.0	5.3077116	145
CGTGTAG	55640	0.0	5.2973557	145
AGATCGG	93420	0.0	5.2532377	145
GCGTCGT	57000	0.0	5.2116265	140-144
GAGCGTC	71275	0.0	5.174242	145
CGTATCA	17815	0.0	5.0772686	60-64
TCGGAAG	90330	0.0	5.0552063	145
ATCGGAA	88615	0.0	5.0055776	145