EGAF00005087770 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087770
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52600560
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	6715	0.0	8.72322	55-59
GAGCGTC	27315	0.0	8.440448	9
AGAGCGT	30795	0.0	7.4865313	8
TCGCCGT	8075	0.0	7.3617787	55-59
GATCGGA	33235	0.0	6.936162	1
ATCGGAA	34880	0.0	6.7759647	2
GTCGCCG	9215	0.0	6.655589	55-59
TCGGAAG	35540	0.0	6.629398	3
GCCGTAT	9220	0.0	6.5261736	55-59
AAGAGCG	36790	0.0	6.4633117	7
CGGAAGA	38500	0.0	6.1008797	4
CGTCGTG	20455	0.0	6.0604258	145
TGGTCGC	10510	0.0	5.973451	50-54
GTGGTCG	11630	0.0	5.4480596	50-54
CGTATCA	11670	0.0	5.3920803	60-64
GCGTCGT	20390	0.0	5.33311	145
GCGTCGG	4150	2.4447218E-9	5.240584	145
AGCGTCG	22285	0.0	5.237448	145