EGAF00005087841 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087841
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61002684
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAC	4925	0.0	24.977018	1
GCGACCA	6765	0.0	19.181293	3
GGCGACC	7810	0.0	16.453781	2
CGACCAC	8420	0.0	15.411112	4
ACCGAGA	12125	0.0	11.000761	9
CCACCGA	13065	0.0	10.375775	7
ACGACGC	3265	0.0	8.481924	45-49
CACCGAG	15965	0.0	8.445638	8
ACCACCG	16505	0.0	8.301082	6
CGACGCT	3455	0.0	7.973514	45-49
CACGACG	4055	0.0	6.6149273	45-49
TCCGATC	5115	0.0	5.414191	55-59
GATCGGA	74040	0.0	5.317074	145
ACACGTC	52965	0.0	5.283694	145
AGATCGG	78635	0.0	5.264529	145
CGTCTGA	48160	0.0	5.2237487	145
ACGTCTG	54515	0.0	5.1600633	145
TCGGAAG	74425	0.0	5.0265517	145
ATCGGAA	73935	0.0	5.020641	145