EGAF00005087886 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005087886
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14710847
Sequences flagged as poor quality	0
Sequence length	150
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGACC	2405	0.0	10.776496	7
TAGTTAG	3310	0.0	9.135651	4
TAGACCC	2770	0.0	9.096648	8
GTTAGAC	3275	0.0	7.913732	6
AACACTA	8200	0.0	7.11114	9
CAACACT	8740	0.0	6.836909	8
CTAGATC	1960	0.0	6.244455	140-144
TAGATCG	7055	0.0	6.0616536	140-144
AGACCCC	4480	0.0	5.9455457	9
GATCGGA	22690	0.0	5.8002057	140-144
AGTTAGA	4870	0.0	5.765352	5
AGATCGG	25700	0.0	5.4682503	140-144
ACACTAG	2315	0.0	5.348939	70-74
GTCGTGT	12605	0.0	5.163299	140-144
GCAACAC	11710	0.0	5.1028333	7
TGTAGGG	9475	0.0	5.060538	140-144
TTAGATC	3110	0.0	5.000288	140-144